Description

Download FASTQ sequencing reads from the NCBI’s Sequence Read Archive (SRA).

Input

name
description
pattern

ch_sra_ids

SRA run identifier.

Structure: [ val(meta), val(id) ]

ch_dbgap_key

Path to a JWT cart file used to access protected dbGAP data on SRA using the sra-toolkit

Structure: [ path(dbgap_key) ]

*.cart

Output

name
description
pattern

reads

Extracted FASTQ file or files if the sequencing reads are paired-end.

Structure: [ val(meta), [ path(reads) ] ]

*.fastq.gz